Hello There,
Thanks for writing in!
1.) To resolve your menu issue, please go to X > Launch > Options > Header > Navbar and set the Navbar Top Height to at least 94px because this is the current height of your navbar with your logo in it.
You can then align your menu by going to X > Launch > Options > Header > Links - Alignment and set “Navbar Top Link Alignment” to at least 35.
2.) To move your logo all the way to the left side of the header, please add the following CSS code in the X > Launch > Theme Options > Global CSS (http://prntscr.com/evui3r)
.x-navbar .x-container.max.width {
width: 98%;
max-width: 100%;
}
Hope this helps. Please let us know how it goes.