Of course literally less than 5 minutes after I post this I and an epiphany and figured it out. I will post code in case others are having the same issue.
.x-navbar .x-nav > li.x-active > a:link,
.x-navbar .x-nav > li > a:hover,
.x-navbar .x-nav > .current-menu-item > a {
-webkit-box-shadow: inset 0 2px 0 0 rgb(239, 180, 42) !important;
box-shadow: inset rgb(239, 180, 42) 0px 4px 0px 0px !important;
}
Sorry to waste anyones time.